PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073046.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28760.7 Da    PI: 6.9637
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.5e-121448640
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    +s+r++ f  R+ g lKKA+ELS+LC++++ +ii 
  XP_011073046.1 14 ESKRNIVFRTRLDGFLKKANELSILCGVDIGIIIH 48
                    7899****************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-7160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.685147IPR002100Transcription factor, MADS-box
CDDcd002663.15E-15284No hitNo description
SuperFamilySSF554559.94E-17390IPR002100Transcription factor, MADS-box
PfamPF003191.2E-111349IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARKKIKHEQ VYHESKRNIV FRTRLDGFLK KANELSILCG VDIGIIIHKQ GENNAIQWPS  60
PQIFRERLHK FLDIPNLERT RKMVVHDRYL EDSVSYETKN VLKLRKKNEL RQSEQLVNEL  120
FQGKSFDELD LHTLNGLQSY LVGMLDNLHQ RDMELNDELQ PSSCPAPMPA HGGGMVMKTS  180
SAIPIFLENP RTDPWFVETV SQEQDITGFM NFPLVANRAT TRIDGEDAAR QVDDVNKPSW  240
QYWSNNVGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073046.10.0PREDICTED: agamous-like MADS-box protein AGL86
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.13e-20AGAMOUS-like 86